华南理工大学学报(自然科学版) ›› 2017, Vol. 45 ›› Issue (11): 100-105.doi: 10.3969/j.issn.1000-565X.2017.11.014

• 生物学 • 上一篇    下一篇

基于等高线的染色体高度曲线提取方法

马立1 李丰甜1 刘波1 陈瑞华2 汝长海3   

  1. 1. 上海大学 机电工程与自动化学院,上海 20007; 2; 苏州大学 附属第一医院,江苏 苏州 215001; 3. 苏州大学 机器人与微系统研究中心,江苏 苏州 215001
  • 收稿日期:2016-04-18 修回日期:2016-12-16 出版日期:2017-11-25 发布日期:2017-10-01
  • 通信作者: 马立(1977-),女,博士,研究员,主要从事微操作机器人技术研究. E-mail:malian@shu.edu.cn
  • 作者简介:马立(1977-),女,博士,研究员,主要从事微操作机器人技术研究.
  • 基金资助:
    国家自然科学基金资助项目(61573238);上海市自然科学基金资助项目(13ZR1415800);上海市教育委员会科 研创新项目(14YZ008)

Extraction of Altitude Curves of Chromosome on the Basis of Contour Line

MA Li1 LI Feng-tian1 LIU Bo1 CHEN Rui-hua2 RU Chang-hai3   

  1. 1.School of Mechatronic Engineering and Automation,Shanghai University,Shanghai 200072,China; 2.The First Affiliated Hospital,Soochow University,Suzhou 215001,Jiangsu,China; 3.Robotics and Microsystems Center,Soochow University,Suzhou 215001,Jiangsu,China
  • Received:2016-04-18 Revised:2016-12-16 Online:2017-11-25 Published:2017-10-01
  • Contact: 马立(1977-),女,博士,研究员,主要从事微操作机器人技术研究. E-mail:malian@shu.edu.cn
  • About author:马立(1977-),女,博士,研究员,主要从事微操作机器人技术研究.
  • Supported by:
    Supported by the National Natural Science Foundation of China(61573238) and the Natural Science Foundation of Shanghai Municipality(13ZR1415800)

摘要: 染色体核型分析对于遗传学研究具有重要意义,但是传统分析方法的样品制备过程复杂,人眼观察分析得到的结果主观性强且效率不高.为了更精确地提取对核型分析有重要意义的染色体高度分布曲线,根据沿染色体的高度变化与显带后染色体的显隐带之间存在的对应关系,提出了基于等高线的染色体表面高度分布曲线提取方法.研究中利用原子力显微镜对空气中制备的染色体样品进行成像,并对比分析了传统方法与基于等高线方法所得到的高度曲线之间的差异.实验结果表明:基于等高线的方法能够更有效地提取沿染色体中心线的高度分布曲线,并且对于弯曲变形较为严重的染色体有很好的效果.

关键词: 染色体, 高度曲线, 等高线, 原子力显微镜

Abstract: The karyotyping plays an important role in genetic researches.However,the traditional method of karyo- type analysis is performed with a complicated banding process,and the result is obtained by the visual analysis of operators.The complicated process of sample preparation and the subjective result make the karyotype analysis la- borious and time-consuming.In order to precisely extract the altitude curve that is of great significance for the karyo- type analysis,a new method of extracting the altitude curves along the chromosomes was proposed on the basis of the relationship between the altitude features of human chromosomes and the band structure under optical microsco- py.Then,the chromosomes prepared in air condition were imaged by using an atomic force microscopy,and the al- titude curves extracted through the conventional method were compared with those from the proposed method.Ex- perimental results show that,the proposed method can extract the altitude curves more effectively,and it also achieves a good effect in handling the chromosomes of serious contraction deformation.

Key words: chromosome, altitude curve, contour line, atomic force microscopy

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